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molconvert csv to V3 sd file

Hello everyone, i have a little issue with molconverter, the task is to convert the csv file with smiles which contain stereochemistry to sdf:V3 file

I use cmd with c:\bin>molconvert sdf:V3 test2.csv -o test2.sdf and have an error on smile which contain stereochemistry, all others smiles are converted correctly.

Stereochemistry in smile are represented as, example: "|&1:11,16,r|"

I have an error "java.lang.ArrayIndexOutOfBoundsException: 10






 at chemaxon.formats.MolImporter.readDoc(

 at chemaxon.formats.MolConverter.readDoc(

 at chemaxon.formats.MolConverter.convert0(

 at chemaxon.formats.MolConverter.convert(

 at chemaxon.formats.MolConverter.main("


Help please.

1 Comment

Problem solved through cxsmiles with tabulation, you can close the topic.

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